Current topics in RNA molecular biology
(BCH/CMM 8310)
RNA Bioinformatics
Select one paper from the list:
- Noirot et al. LeARN: a platform for detecting, clustering and annotating non-coding RNAs. BMC Bioinformatics (2008) vol. 9 pp. 21
-
Xiao et
al. Identification of small noncoding RNAs in
Helicobacter pylori by a bioinformatics-based
approach. Curr Microbiol (2009) vol. 58 (3)
pp. 258-63
(Presenter: Vian Peshdary) - Raasch
et al. Non-coding RNA detection methods combined to
improve usability, reproducibility and precision. BMC
Bioinformatics (2010) vol. 11 (1) pp. 491
(Presenter: Peng Liu)
Suggested readings, review papers:
- Gorodkin et al. De novo prediction of structured RNAs from genomic sequences. Trends Biotechnol (2010) vol. 28 (1) pp. 9-19
- Schroeder. Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships. J Virol (2009) vol. 83 (13) pp. 6326-34
- Soldà et al. An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes. Brief Bioinform (2009) pp.
- Machado-Lima et al. Computational methods in noncoding RNA research. J Math Biol (2008) vol. 56 (1-2) pp. 15-49